7VM1
Crystal Structure of HasAp Capturing Iron Tetra(4-pyridyl)porphyrin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-02-08 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.000 |
Spacegroup name | P 1 |
Unit cell lengths | 31.318, 43.981, 130.116 |
Unit cell angles | 99.17, 93.90, 92.87 |
Refinement procedure
Resolution | 43.370 - 2.000 |
R-factor | 0.2307 |
Rwork | 0.229 |
R-free | 0.26040 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ell |
RMSD bond length | 0.012 |
RMSD bond angle | 1.573 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0257) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.370 | 43.370 | 2.060 |
High resolution limit [Å] | 2.000 | 8.970 | 2.000 |
Rmerge | 0.086 | 0.025 | 0.342 |
Rmeas | 0.109 | 0.032 | 0.429 |
Total number of observations | 115587 | ||
Number of reflections | 44520 | 512 | 3210 |
<I/σ(I)> | 6.29 | 16.11 | 2.3 |
Completeness [%] | 97.2 | 98.7 | 95 |
Redundancy | 2.596 | 2.658 | 2.665 |
CC(1/2) | 0.996 | 0.999 | 0.927 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 100mM Tris-HCl (pH 8.5), 1260mM Ammonium sulfate, 200mM Lithium sulfate |