7VA6
PaOrn Oligoribonuclease D11A mutant with RNA GU complex structure
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-22 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97915 |
Spacegroup name | I 41 |
Unit cell lengths | 82.993, 82.993, 192.923 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 26.750 - 2.100 |
R-factor | 0.168 |
Rwork | 0.167 |
R-free | 0.19600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7v9z |
RMSD bond length | 0.007 |
RMSD bond angle | 0.751 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.140 |
High resolution limit [Å] | 2.100 | 2.100 |
Rpim | 0.056 | 0.296 |
Number of reflections | 38215 | 1918 |
<I/σ(I)> | 22.74 | 2.44 |
Completeness [%] | 100.0 | 99.9 |
Redundancy | 6.4 | 5.5 |
CC(1/2) | 0.996 | 0.884 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 8 | 293 | 1.2M (NH4)2HPO4, 0.1M imidazole pH 8.0 |