7V8H
Crystal structure of LRR domain from Shigella flexneri IpaH1.4
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-03 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9793 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 108.780, 108.780, 99.336 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 60.820 - 2.460 |
R-factor | 0.1962 |
Rwork | 0.194 |
R-free | 0.23210 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5kh1 |
RMSD bond length | 0.011 |
RMSD bond angle | 1.255 |
Data reduction software | XDS (built 20190606) |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 76.919 | 2.498 |
High resolution limit [Å] | 2.456 | 2.456 |
Rpim | 0.067 | 0.518 |
Number of reflections | 21136 | 1091 |
<I/σ(I)> | 14.4 | 3.1 |
Completeness [%] | 99.8 | 100 |
Redundancy | 24.6 | 25.4 |
CC(1/2) | 0.998 | 0.810 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 4 | 289 | 0.1 M sodium citrate (pH 4.0), 0.8 M (NH4)2SO4 |