7V3A
Crystal structure of apo-NP exonuclease C409A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE BL13B1 |
Synchrotron site | NSRRC |
Beamline | BL13B1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-12-27 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 127.324, 59.431, 71.533 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.794 - 2.100 |
R-factor | 0.2058 |
Rwork | 0.203 |
R-free | 0.23980 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7v37 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 2.180 |
High resolution limit [Å] | 2.100 | 4.520 | 2.100 |
Rmerge | 0.089 | 0.047 | 0.447 |
Rmeas | 0.097 | 0.052 | 0.492 |
Rpim | 0.038 | 0.020 | 0.202 |
Total number of observations | 215047 | ||
Number of reflections | 33231 | 3540 | 3255 |
<I/σ(I)> | 8.6 | ||
Completeness [%] | 99.8 | 99.7 | 99.5 |
Redundancy | 6.5 | 6.5 | 5.5 |
CC(1/2) | 0.998 | 0.889 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.2 M Magnesium formate dihydrate, 20% w/v Polyethylene glycol 3,350 |