7V09
Crystal structure of ECL_RS08780, putative sugar transport system periplasmic sugar-binding protein
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | ROTATING ANODE |
| Source details | RIGAKU MICROMAX-007 |
| Temperature [K] | 100 |
| Detector technology | IMAGE PLATE |
| Collection date | 2018-10-04 |
| Detector | RIGAKU RAXIS IV |
| Wavelength(s) | 1.5418 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 69.956, 67.618, 86.656 |
| Unit cell angles | 90.00, 104.22, 90.00 |
Refinement procedure
| Resolution | 19.860 - 2.000 |
| R-factor | 0.2523 |
| Rwork | 0.250 |
| R-free | 0.29560 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | Alphafold2 |
| RMSD bond length | 0.002 |
| RMSD bond angle | 0.448 |
| Data reduction software | XDS |
| Data scaling software | Aimless |
| Phasing software | PHENIX |
| Refinement software | PHENIX (1.20_4459) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 19.860 | 2.050 |
| High resolution limit [Å] | 2.000 | 2.000 |
| Rmerge | 0.076 | 0.410 |
| Rpim | 0.066 | 0.373 |
| Number of reflections | 51868 | 3675 |
| <I/σ(I)> | 10.3 | 2.1 |
| Completeness [%] | 97.6 | 94.2 |
| Redundancy | 3.9 | 3 |
| CC(1/2) | 0.996 | 0.624 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7 | 298 | 20% PEG 3350, 0.2 M CaCl2 |
