7UXQ
Structure of PDL1 in complex with FP28135, a Helicon Polypeptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE TPS 05A |
Synchrotron site | NSRRC |
Beamline | TPS 05A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2021-06-11 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 0.99984 |
Spacegroup name | F 41 3 2 |
Unit cell lengths | 236.990, 236.990, 236.990 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.380 - 2.890 |
R-factor | 0.2012 |
Rwork | 0.200 |
R-free | 0.22790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4zqk |
RMSD bond length | 0.009 |
RMSD bond angle | 1.187 |
Data reduction software | xia2 |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.380 | 2.990 |
High resolution limit [Å] | 2.890 | 2.890 |
Rmerge | 0.382 | |
Number of reflections | 13300 | 1294 |
<I/σ(I)> | 26.6 | |
Completeness [%] | 99.9 | |
Redundancy | 83.4 | |
CC(1/2) | 0.996 | 0.776 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291.15 | 1.1 M Sodium Malonate pH 7.0, 0.1 M HEPES pH 7.0, 0.5% v/v Jeffamine ED-2001 Reagent pH 7.0. |