Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7UP7

Crystal structure of C-terminal Domain of MSK1 in complex with covalently bound with literature RSK2 inhibitor indazole cyanoacrylamide compound 26 (soak)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-F
Synchrotron siteAPS
Beamline21-ID-F
Temperature [K]100
Detector technologyCCD
Collection date2018-12-13
DetectorRAYONIX MX-300
Wavelength(s)0.97872
Spacegroup nameP 21 21 21
Unit cell lengths50.930, 90.520, 135.580
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.680 - 2.800
R-factor0.1877
Rwork0.181
R-free0.24440
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)in-house model
RMSD bond length0.003
RMSD bond angle0.591
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHENIX
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.870
High resolution limit [Å]2.80012.5202.800
Rmerge0.0860.0220.576
Rmeas0.0950.0260.637
Number of reflections160522071170
<I/σ(I)>16.9442.943
Completeness [%]99.894.5100
Redundancy5.2674.1115.377
CC(1/2)0.9980.9990.853
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8289Crystals were produced by sitting drop vapor diffusion with an equal volume of the protein, Msk1-C terminal domain (PID7059-1, CID101276) at 5 mg/ml with 1.5mM UCB1590591/BSI106893 in 25mM HEPES pH 7.5, 150mM NaCl, 5% Glycerol, 5mM BME and a crystallization buffer containing 100mM sodium malonate pH 8.0, 100mM Tris pH 8.0, 30% w/v PEG 1000 (tray ID 305760, well F2, CID101276_fine1 screen). Crystals were soaked for 4 days in 2.5ul of reservoir with 1mM UCB1590956/BSI100006.Crystals were cryo protected with 20% EG + compound and vitrified in in liquid N2. Puck ID WJP9-1

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon