Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7UF2

RibB from Vibrio cholera bound with D-xylulose-5-phosphate (D-Xy5P) and manganese

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL9-2
Synchrotron siteSSRL
BeamlineBL9-2
Temperature [K]100
Detector technologyPIXEL
Collection date2019-04-12
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.97946
Spacegroup nameC 2 2 21
Unit cell lengths61.029, 79.106, 91.340
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution39.550 - 2.000
R-factor0.1695
Rwork0.164
R-free0.21990
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4p8e
RMSD bond length0.011
RMSD bond angle1.248
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwareREFMAC (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]39.5502.050
High resolution limit [Å]2.0002.000
Rpim0.0430.264
Number of reflections151761092
<I/σ(I)>16.74.2
Completeness [%]99.3
Redundancy6.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2980.1 M lithium acetate, 12-18% w/v PEG3350

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon