7U9H
Crystal Structure of Escherichia coli apo Pyridoxal 5'-phosphate homeostasis protein (YGGS)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-04-02 |
Detector | DECTRIS EIGER R 4M |
Wavelength(s) | 1.5406 |
Spacegroup name | I 41 2 2 |
Unit cell lengths | 124.160, 124.160, 82.886 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.503 - 2.000 |
R-factor | 0.1881 |
Rwork | 0.186 |
R-free | 0.21830 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1w8g |
Data reduction software | CrysalisPro (41.64.69a) |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 28.503 | 28.500 | 2.050 |
High resolution limit [Å] | 2.000 | 8.940 | 2.000 |
Rmerge | 0.068 | 0.016 | 0.853 |
Rmeas | 0.071 | 0.016 | 0.885 |
Rpim | 0.018 | 0.004 | 0.235 |
Total number of observations | 3739 | 22567 | |
Number of reflections | 22173 | 282 | 1608 |
<I/σ(I)> | 33 | 107.7 | 4.2 |
Completeness [%] | 100.0 | 97 | 100 |
Redundancy | 15 | 13.3 | 14 |
CC(1/2) | 1.000 | 1.000 | 0.903 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 2M Ammonium sulfate, 5% Isopropanol |