7U9C
Crystal Structure of the wild type Escherichia coli Pyridoxal 5'-phosphate homeostasis protein (YGGS)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-03-11 |
Detector | DECTRIS EIGER R 4M |
Wavelength(s) | 1.5406 |
Spacegroup name | I 41 2 2 |
Unit cell lengths | 124.188, 124.188, 83.122 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.271 - 2.100 |
R-factor | 0.1799 |
Rwork | 0.178 |
R-free | 0.21840 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1w8g |
Data reduction software | CrysalisPro (41.64.69a) |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.271 | 29.271 | 2.160 |
High resolution limit [Å] | 2.100 | 8.910 | 2.100 |
Rmerge | 0.069 | 0.015 | 0.684 |
Rmeas | 0.071 | 0.016 | 0.710 |
Rpim | 0.019 | 0.004 | 0.188 |
Number of reflections | 19252 | 288 | 1557 |
<I/σ(I)> | 30.4 | ||
Completeness [%] | 100.0 | 97.1 | 100 |
Redundancy | 13.8 | 12.2 | 14 |
CC(1/2) | 1.000 | 1.000 | 0.907 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 0.1M HEPES/NaOH pH 7.5, 0.8 NaH2PO4/0.8M KH2PO4 |