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7U8T

Vps13 adaptor binding domain in complex with Mcp1 PxP motif peptide

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-E
Synchrotron siteAPS
Beamline24-ID-E
Temperature [K]100
Detector technologyPIXEL
Collection date2021-07-20
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.979180
Spacegroup nameP 1 21 1
Unit cell lengths83.735, 91.225, 132.769
Unit cell angles90.00, 102.16, 90.00
Refinement procedure
Resolution48.360 - 3.000
R-factor0.2514
Rwork0.250
R-free0.28480
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)AlphaFold2 model
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.20rc3_4411)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.3603.110
High resolution limit [Å]3.0003.000
Rmerge0.0440.322
Rmeas0.0520.378
Rpim0.0280.197
Number of reflections393833799
<I/σ(I)>17.23.4
Completeness [%]98.597.6
Redundancy3.53.6
CC(1/2)0.9990.970
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.229575 mM imidazole pH 8.2, 70 mM lithium sulfate, 500 mM sodium chloride

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PDB entries from 2024-07-10

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