7U1V
Structure of SPAC806.04c protein from fission yeast covalently bound to BeF3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-12-17 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.4857 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 59.495, 115.864, 161.674 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 59.490 - 2.100 |
R-factor | 0.1806 |
Rwork | 0.179 |
R-free | 0.20870 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7t7k |
RMSD bond length | 0.007 |
RMSD bond angle | 0.908 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.20_4459) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 161.670 | 2.150 |
High resolution limit [Å] | 2.100 | 2.100 |
Rpim | 0.027 | 0.323 |
Number of reflections | 66303 | 4219 |
<I/σ(I)> | 19.2 | 2.1 |
Completeness [%] | 99.7 | 96.1 |
Redundancy | 12.8 | 11.3 |
CC(1/2) | 0.999 | 0.793 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.8 | 295 | 1.8 M sodium/potassium phosphate (pH 7.8), cryoprotected in crystallization buffer supplemented with 25% sucrose |