7TWG
Crystal structure of SARS-CoV-2 NSP3 macrodomain at 293 K (P43 crystal form, 153 kGy)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-1 |
Synchrotron site | SSRL |
Beamline | BL12-1 |
Temperature [K] | 293 |
Detector technology | PIXEL |
Collection date | 2021-02-28 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.8856 |
Spacegroup name | P 43 |
Unit cell lengths | 89.211, 89.211, 40.261 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.900 - 1.100 |
R-factor | 0.1064 |
Rwork | 0.105 |
R-free | 0.12630 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7kqo |
RMSD bond length | 0.011 |
RMSD bond angle | 1.167 |
Data reduction software | Adxv (Feb 5, 2021) |
Data scaling software | XDS (Feb 5, 2021) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20_4459) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.900 | 1.139 |
High resolution limit [Å] | 1.100 | 1.100 |
Rmerge | 0.053 | 1.057 |
Number of reflections | 128245 | 12742 |
<I/σ(I)> | 14.17 | 1.33 |
Completeness [%] | 99.7 | |
Redundancy | 14.17 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 9.5 | 293 | 100 mM CHES, pH 9.5, 32% PEG 3000 |