Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7TPY

Selenium-free nitrogenase Fe protein (Av2) from A. vinelandii (nucleotide control)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL12-2
Synchrotron siteSSRL
BeamlineBL12-2
Temperature [K]100
Detector technologyPIXEL
Collection date2021-01-08
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.97869, 0.98062
Spacegroup nameP 2 21 21
Unit cell lengths45.438, 73.726, 74.543
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution37.270 - 1.480
R-factor0.1739
Rwork0.173
R-free0.19350
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6n4l
Data reduction softwareXDS
Data scaling softwareAimless (0.7.4)
Phasing softwareMOLREP
Refinement softwarePHENIX (1.19.2-4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]45.4801.510
High resolution limit [Å]1.4801.480
Rmerge0.0791.677
Rmeas0.0861.819
Rpim0.0320.699
Number of reflections425022147
<I/σ(I)>16.3
Completeness [%]99.999.7
Redundancy1313
CC(1/2)0.9990.835
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.529836-41% PEG400, 0.1-0.3 M sodium chloride, 0.1 M HEPES, pH 7.5, 2.5 mM dithionite, 0.17 mM Cymal-7

225946

PDB entries from 2024-10-09

PDB statisticsPDBj update infoContact PDBjnumon