7TDU
Joint X-ray/neutron structure of SARS-CoV-2 main protease (3CL Mpro) in complex with BBH-1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 293 |
Detector technology | PIXEL |
Collection date | 2021-10-11 |
Detector | DECTRIS EIGER R 4M |
Wavelength(s) | 1.54 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 55.020, 81.217, 88.825 |
Unit cell angles | 90.00, 96.72, 90.00 |
Refinement procedure
Resolution | 29.900 - 2.200 |
Rwork | 0.237 |
R-free | 0.25700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7n8c |
RMSD bond length | 0.011 |
RMSD bond angle | 1.200 |
Data reduction software | CrysalisPro |
Data scaling software | CrysalisPro |
Phasing software | PHASER |
Refinement software | nCNS (1.0.0) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 59.750 | 2.320 | 1.920 |
High resolution limit [Å] | 1.850 | 2.200 | 1.850 |
Rmerge | 0.076 | 0.367 | 0.671 |
Rpim | 0.223 | ||
Number of reflections | 32013 | 1840 | 3127 |
<I/σ(I)> | 13.6 | 2.1 | 1.4 |
Completeness [%] | 96.6 | 64.2 | 94.2 |
Redundancy | 5.4 | 2.9 | 5.4 |
CC(1/2) | 0.825 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.6 | 287 | 20% PEG3350, 0.1 M Bis-Tris pH 6.5 |
1 | VAPOR DIFFUSION, SITTING DROP | 6.6 | 287 | 20% PEG3350, 0.1 M Bis-Tris pH 6.5 |