7TC3
Human APE1 in the apo form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.1 |
Synchrotron site | ALS |
Beamline | 5.0.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-05-16 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9774 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 46.651, 141.442, 45.264 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.942 - 1.252 |
R-factor | 0.1524 |
Rwork | 0.151 |
R-free | 0.17790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4lnd |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (dev_3409) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 38.942 | 38.940 | 1.270 |
High resolution limit [Å] | 1.250 | 6.860 | 1.250 |
Rmerge | 0.044 | 0.024 | 1.484 |
Rmeas | 0.046 | 0.025 | 1.935 |
Rpim | 0.013 | 0.007 | 1.222 |
Total number of observations | 6923 | 5335 | |
Number of reflections | 82613 | 615 | 3191 |
<I/σ(I)> | 22.6 | 75.4 | 0.5 |
Completeness [%] | 98.9 | 99.6 | 78.9 |
Redundancy | 10.8 | 11.3 | 1.7 |
CC(1/2) | 1.000 | 1.000 | 0.166 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 295 | PEG3350, Sodium Formate |