7TC1
Crystal structure of D179N KPC-2 beta-lactamase in complex with vaborbactam
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-08-29 |
Detector | DECTRIS EIGER2 S 16M |
Wavelength(s) | 0.97935 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 51.209, 66.021, 72.950 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 27.760 - 1.160 |
R-factor | 0.1289 |
Rwork | 0.127 |
R-free | 0.15760 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2ov5 |
RMSD bond length | 0.017 |
RMSD bond angle | 2.002 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 27.760 | 1.200 |
High resolution limit [Å] | 1.160 | 1.160 |
Rmerge | 0.064 | 0.620 |
Number of reflections | 83367 | 5359 |
<I/σ(I)> | 20.2 | 2.6 |
Completeness [%] | 98.8 | 84.2 |
Redundancy | 12.6 | 8.9 |
CC(1/2) | 1.000 | 0.880 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4 | 298 | 0.1 M Sodium citrate HCl pH 4, 0.8 M Ammonium sulfate |