7T9Z
Human Ornithine Aminotransferase (hOAT) crystallized at pH 6.0
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-04-17 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.127 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 200.910, 110.860, 56.930 |
Unit cell angles | 90.00, 106.40, 90.00 |
Refinement procedure
Resolution | 54.610 - 2.150 |
R-factor | 0.2706 |
Rwork | 0.266 |
R-free | 0.27590 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1oat |
RMSD bond length | 0.006 |
RMSD bond angle | 0.665 |
Data reduction software | MOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 96.100 | 2.020 |
High resolution limit [Å] | 1.990 | 1.990 |
Rpim | 0.133 | |
Number of reflections | 60876 | 14325 |
<I/σ(I)> | 4.9 | 1.2 |
Completeness [%] | 92.5 | |
Redundancy | 3.4 | |
CC(1/2) | 0.986 | 0.371 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293 | Purified holo-hOAT was buffer-exchanged into 100 mM MES, 200 mM NaCl, 100 uM PLP, pH 6.0 buffer, and then concentrated to ~6 mg/mL. The crystallization was performed via the hanging drop vapor diffusion method according to previously published conditions with 50 mM Tricine pH 7.8 substituted to 50 mM MES pH 6.0 buffer. The crystals grew at room temperature within three days and reached their maximum size in a week. |