7T8M
Co-crystal structure of SARS-CoV-2 Mpro C145A with substrate peptide 5/6
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-08-31 |
Detector | RIGAKU HyPix-6000HE |
Wavelength(s) | 1.54178 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 67.558, 99.665, 103.393 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 24.140 - 1.600 |
R-factor | 0.1613 |
Rwork | 0.161 |
R-free | 0.19710 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7l0d |
RMSD bond length | 0.017 |
RMSD bond angle | 1.473 |
Data reduction software | CrysalisPro |
Data scaling software | CrysalisPro |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 24.140 | 1.657 |
High resolution limit [Å] | 1.600 | 1.600 |
Rmerge | 0.050 | 0.451 |
Rmeas | 0.055 | 0.543 |
Rpim | 0.022 | 0.297 |
Number of reflections | 85584 | 7267 |
<I/σ(I)> | 22.08 | 2.51 |
Completeness [%] | 92.4 | 79.46 |
Redundancy | 5.5 | 3.1 |
CC(1/2) | 0.999 | 0.813 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293 | 10-20 % (w/v) PEG 3350, 0.20-0.30 M NaCl, and 0.1 M Bis-Tris methane pH 5.5 |