7T8I
Crystal structure of the ImmR transcriptional regulator DNA-binding domain of Bacillus subtilis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-2 |
Synchrotron site | ESRF |
Beamline | ID23-2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-07-13 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.87260 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 54.033, 48.340, 64.460 |
Unit cell angles | 90.00, 97.47, 90.00 |
Refinement procedure
Resolution | 43.970 - 2.100 |
R-factor | 0.2631 |
Rwork | 0.259 |
R-free | 0.34640 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | AlphaFold model |
RMSD bond length | 0.014 |
RMSD bond angle | 1.293 |
Data reduction software | iMOSFLM |
Data scaling software | STARANISO |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.1_4122) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.970 | 2.150 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.255 | 0.617 |
Rpim | 0.186 | 0.433 |
Number of reflections | 9322 | 464 |
<I/σ(I)> | 3.3 | |
Completeness [%] | 94.0 | 71.5 |
Redundancy | 2.8 | |
CC(1/2) | 0.904 | 0.591 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | Suitable crystals of ImmR-DBD were obtained with 18%(w) PEG 3350, 10 mM magnesium chloride, 50 mM Tris-HCl pH 8.5 as reservoir solution |