7T7Y
The crystal structure of family 8 carbohydrate-binding module from Dictyostelium discoideum complexed with iodine atoms
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | LNLS BEAMLINE W01B-MX2 |
Synchrotron site | LNLS |
Beamline | W01B-MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-05-12 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.8 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 36.788, 47.267, 79.344 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.610 - 1.810 |
R-factor | 0.2324 |
Rwork | 0.232 |
R-free | 0.24750 |
Structure solution method | SAD |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.8) |
Phasing software | CRANK2 (2.0.281) |
Refinement software | PHENIX (1.19.2) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.270 | 47.270 | 1.850 |
High resolution limit [Å] | 1.810 | 9.050 | 1.810 |
Rmerge | 0.171 | 0.110 | 0.498 |
Rmeas | 0.183 | 0.116 | 0.593 |
Rpim | 0.062 | 0.037 | 0.314 |
Total number of observations | 106102 | 1240 | 1909 |
Number of reflections | 12778 | 139 | 605 |
<I/σ(I)> | 12 | 21.3 | 3.2 |
Completeness [%] | 96.9 | 99.7 | 78.9 |
Redundancy | 8.3 | 8.9 | 3.2 |
CC(1/2) | 0.973 | 0.988 | 0.651 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 1.6 M di-sodium DL-malate |