7SXP
G-quadruplex structure formed in the NRAS mRNA with a G8U substitution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-09-25 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 1.104 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 36.402, 36.402, 70.103 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 31.530 - 2.900 |
R-factor | 0.2421 |
Rwork | 0.241 |
R-free | 0.27720 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.619 |
Data reduction software | XDS |
Data scaling software | pointless |
Phasing software | PHENIX (1.19.2_4158) |
Refinement software | PHENIX (1.20.1_4487+SVN) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 31.530 | 2.420 |
High resolution limit [Å] | 2.300 | 2.320 |
Rpim | 0.058 | 0.678 |
Number of reflections | 2556 | 305 |
<I/σ(I)> | 5.3 | 1.2 |
Completeness [%] | 99.6 | |
Redundancy | 17.4 | |
CC(1/2) | 0.996 | 0.468 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | 20 - 25 % PEG 3350, 80 mM sodium chloride and 100 mM BIS-TRIS pH 6.5 |