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7SXP

G-quadruplex structure formed in the NRAS mRNA with a G8U substitution

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-E
Synchrotron siteAPS
Beamline24-ID-E
Temperature [K]100
Detector technologyPIXEL
Collection date2020-09-25
DetectorDECTRIS EIGER2 X 16M
Wavelength(s)1.104
Spacegroup nameP 31 2 1
Unit cell lengths36.402, 36.402, 70.103
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution31.530 - 2.900
R-factor0.2421
Rwork0.241
R-free0.27720
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.003
RMSD bond angle0.619
Data reduction softwareXDS
Data scaling softwarepointless
Phasing softwarePHENIX (1.19.2_4158)
Refinement softwarePHENIX (1.20.1_4487+SVN)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]31.5302.420
High resolution limit [Å]2.3002.320
Rpim0.0580.678
Number of reflections2556305
<I/σ(I)>5.31.2
Completeness [%]99.6
Redundancy17.4
CC(1/2)0.9960.468
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.529320 - 25 % PEG 3350, 80 mM sodium chloride and 100 mM BIS-TRIS pH 6.5

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PDB entries from 2024-07-10

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