7SV4
Crystal structure of SpaA-SLH in complex with 4,6-Pyr-beta-D-ManNAc-(1->4)-beta-D-GlcNAc-(1->3)-4,6-Pyr-beta-D-ManNAcOMe
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-03-15 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 34.694, 67.302, 72.749 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.880 - 2.060 |
R-factor | 0.2066 |
Rwork | 0.205 |
R-free | 0.23940 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6cwm |
RMSD bond length | 0.003 |
RMSD bond angle | 1.230 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 20.000 | 20.000 | 2.130 |
High resolution limit [Å] | 2.060 | 4.420 | 2.060 |
Rmerge | 0.143 | 0.102 | 0.591 |
Rmeas | 0.150 | 0.107 | 0.669 |
Rpim | 0.043 | 0.029 | 0.295 |
Total number of observations | 113668 | ||
Number of reflections | 11130 | 1234 | 995 |
<I/σ(I)> | 13.5 | ||
Completeness [%] | 98.4 | 100 | 90.1 |
Redundancy | 10.2 | 12.9 | 3.3 |
CC(1/2) | 0.995 | 0.137 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 291.15 | 0.2 M Magnesium Chloride, 0.1 M Bis-Tris pH 5.5, 25% PEG 3350 |