7SPV
Crystal structure of photoactive yellow protein (PYP); F92oCNF construct
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-1 |
Synchrotron site | SSRL |
Beamline | BL12-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-02-26 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.7126 |
Spacegroup name | P 65 |
Unit cell lengths | 40.877, 40.877, 117.486 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 35.400 - 1.180 |
R-factor | 0.166 |
Rwork | 0.165 |
R-free | 0.18900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1nwz |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.160 | 1.200 |
High resolution limit [Å] | 1.180 | 1.180 |
Rmerge | 0.084 | 3.734 |
Rmeas | 0.085 | 3.795 |
Rpim | 0.013 | 0.659 |
Total number of observations | 1534716 | 46743 |
Number of reflections | 36561 | 1485 |
<I/σ(I)> | 23.3 | 1.3 |
Completeness [%] | 99.1 | 82 |
Redundancy | 42 | 31.5 |
CC(1/2) | 1.000 | 0.685 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293 | 20 mM potassium phosphate, pH 6.0, 1 M NaCl; 2.0 M ammonium sulfate |