7SPE
Crystal structure of sperm whale myoglobin variant sMb5(O2beY)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-10-13 |
Detector | DECTRIS PILATUS3 R 300K |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 34.436, 54.339, 76.583 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 27.192 - 1.700 |
R-factor | 0.1857 |
Rwork | 0.184 |
R-free | 0.21170 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6m8f |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 1.730 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.120 | 0.578 |
Rpim | 0.074 | 0.542 |
Number of reflections | 14910 | 430 |
<I/σ(I)> | 10.5 | |
Completeness [%] | 89.9 | |
Redundancy | 2.9 | |
CC(1/2) | 0.993 | 0.634 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | 160 nl of protein (1 mM) in 20 mM Tris pH 8.4, 1 mM EDTA, was mixed with an equal volume of reservoir solution, 3.0 M ammonium sulfate, 10% w/v glycerol. |