7SGI
Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with Inhibitor 14
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-12-15 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97911 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 80.500, 80.500, 246.632 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 69.710 - 2.150 |
R-factor | 0.1916 |
Rwork | 0.190 |
R-free | 0.22230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5td7 |
RMSD bond length | 0.007 |
RMSD bond angle | 0.898 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 69.710 | 2.210 |
High resolution limit [Å] | 2.150 | 2.150 |
Rmerge | 0.136 | 1.168 |
Rpim | 0.068 | 0.631 |
Number of reflections | 51497 | 4158 |
<I/σ(I)> | 10.8 | 2.1 |
Completeness [%] | 100.0 | |
Redundancy | 9.3 | |
CC(1/2) | 0.994 | 0.574 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 10 mg/mL HDAC10, 2 mM Inhibitor 14, 1:1000 trypsin:HDAC10, 0.131 M Sodium Phosphate Monobasic, 0.044 M Sodium Phosphate Dibasic, 3% (v/v) glycerol, and 20% (w/v) PEG3350 |