7SGB
[C-C] DNA mismatch in a self-assembling rhombohedral lattice at pH 5.5
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-18 |
Detector | DECTRIS EIGER2 X 9M |
Wavelength(s) | 1.00743 |
Spacegroup name | H 3 |
Unit cell lengths | 107.059, 107.059, 90.287 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 32.670 - 5.200 |
R-factor | 0.2357 |
Rwork | 0.233 |
R-free | 0.32130 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5w6w |
RMSD bond length | 0.007 |
RMSD bond angle | 0.948 |
Data reduction software | autoPROC |
Data scaling software | STARANISO |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 64.625 | 64.625 | 6.256 |
High resolution limit [Å] | 5.200 | 10.197 | 5.200 |
Rmerge | 6.063 | ||
Number of reflections | 1229 | 199 | 200 |
<I/σ(I)> | 7.6 | 20.6 | 0.4 |
Completeness [%] | 85.7 | 100 | |
Redundancy | 7.3 | 7.5 | 7.9 |
CC(1/2) | 0.999 | 0.999 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 293 | MOPS, Magnesium sulfate |