7SF0
Crystal structure of Vaccinia Virus decapping enzyme D9 in complex with trinucleotide substrate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.3.1 |
Synchrotron site | ALS |
Beamline | 8.3.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-19 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.115869 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 52.740, 139.990, 76.020 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 69.995 - 1.950 |
R-factor | 0.205288343236 |
Rwork | 0.201 |
R-free | 0.24709 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7sez |
RMSD bond length | 0.005 |
RMSD bond angle | 0.919 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 70.000 | 2.020 |
High resolution limit [Å] | 1.950 | 1.950 |
Rmerge | 0.083 | 1.142 |
Number of reflections | 20891 | 2021 |
<I/σ(I)> | 20.86 | |
Completeness [%] | 99.8 | |
Redundancy | 12.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | sodium sulfate, PEG3350, Bis Tris propane pH 7.5, magnesium chloride |