7S7E
STRUCTURE OF HLA-B*07:02 IN COMPLEX WITH DOT1L(998-1006) PEPTIDE
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-2 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-03-04 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97932 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 65.299, 65.299, 238.531 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.200 - 2.040 |
R-factor | 0.1739 |
Rwork | 0.172 |
R-free | 0.23500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7rzd |
RMSD bond length | 0.007 |
RMSD bond angle | 1.482 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.220 | 2.090 |
High resolution limit [Å] | 2.040 | 2.040 |
Rmerge | 0.143 | 0.872 |
Number of reflections | 34270 | 2435 |
<I/σ(I)> | 11.6 | 2.8 |
Completeness [%] | 99.9 | 98.6 |
Redundancy | 10.9 | 10.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 290 | 18-24% PEG4000, 0.1 SODIUM CITRATE, 20% ISOPROPANOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE |