7S6F
Crystal structure of UrtA1 from Synechococcus WH8102 in complex with urea and calcium
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I23 |
Synchrotron site | Diamond |
Beamline | I23 |
Temperature [K] | 50 |
Detector technology | PIXEL |
Collection date | 2020-02-27 |
Detector | DECTRIS PILATUS 12M |
Wavelength(s) | 2.7552 |
Spacegroup name | P 21 2 21 |
Unit cell lengths | 47.510, 71.390, 120.460 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 71.492 - 1.800 |
Rwork | 0.159 |
R-free | 0.19030 |
Structure solution method | SAD |
RMSD bond length | 0.010 |
RMSD bond angle | 1.612 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | CRANK2 |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 120.460 | 120.460 | 1.840 |
High resolution limit [Å] | 1.800 | 9.000 | 1.800 |
Rmerge | 0.156 | 0.093 | 2.902 |
Rmeas | 0.160 | 0.095 | 3.139 |
Rpim | 0.032 | 0.016 | 1.122 |
Number of reflections | 35399 | 20622 | 21352 |
<I/σ(I)> | 18 | ||
Completeness [%] | 91.3 | 99.9 | 76 |
Redundancy | 38.4 | 53 | 12.5 |
CC(1/2) | 0.999 | 0.999 | 0.161 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 295 | 0.05 M Sodium Hepes: MOPS pH 7.5, 0.03 MgCl2, 0.03 CaCl2; 20 % PEG 500 MME; 10 % Peg 20000 Cryo: 30 % Ethylene Glycol |