7S0B
Structure of the SARS-CoV-2 RBD in complex with neutralizing antibody N-612-056
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-02-10 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | .97946 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 102.297, 153.656, 96.590 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.410 - 2.900 |
R-factor | 0.217 |
Rwork | 0.215 |
R-free | 0.25970 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7k8m |
RMSD bond length | 0.004 |
RMSD bond angle | 0.905 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.1_4122) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 38.960 | 3.040 |
High resolution limit [Å] | 2.900 | 2.900 |
Rmerge | 0.187 | 1.330 |
Rpim | 0.083 | 0.828 |
Number of reflections | 34420 | 4471 |
<I/σ(I)> | 6.4 | 1.5 |
Completeness [%] | 99.8 | 99.1 |
Redundancy | 6.6 | |
CC(1/2) | 0.993 | 0.728 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | 0.2 M Lithium citrate tribasic tetrahydrate and 20% w/v polyethylene glycol 3,350 |