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7S0B

Structure of the SARS-CoV-2 RBD in complex with neutralizing antibody N-612-056

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL12-2
Synchrotron siteSSRL
BeamlineBL12-2
Temperature [K]100
Detector technologyPIXEL
Collection date2021-02-10
DetectorDECTRIS PILATUS 6M
Wavelength(s).97946
Spacegroup nameP 21 21 2
Unit cell lengths102.297, 153.656, 96.590
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution38.410 - 2.900
R-factor0.217
Rwork0.215
R-free0.25970
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7k8m
RMSD bond length0.004
RMSD bond angle0.905
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.19.1_4122)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]38.9603.040
High resolution limit [Å]2.9002.900
Rmerge0.1871.330
Rpim0.0830.828
Number of reflections344204471
<I/σ(I)>6.41.5
Completeness [%]99.899.1
Redundancy6.6
CC(1/2)0.9930.728
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2950.2 M Lithium citrate tribasic tetrahydrate and 20% w/v polyethylene glycol 3,350

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