7RVD
Segment from the mouse/cow prion protein 168-176 QYSNQNNFV
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ELECTRON MICROSCOPE |
Source details | OTHER |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2016-11-13 |
Detector | TVIPS TEMCAM-F416 |
Wavelength(s) | 0.0251 |
Spacegroup name | P 1 |
Unit cell lengths | 4.870, 10.170, 31.290 |
Unit cell angles | 94.65, 90.73, 101.15 |
Refinement procedure
Resolution | 10.391 - 1.003 |
R-factor | 0.2056 |
Rwork | 0.201 |
R-free | 0.24990 |
Structure solution method | AB INITIO PHASING |
RMSD bond length | 0.008 |
RMSD bond angle | 0.920 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | SHELXD |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 10.391 | 10.391 | 1.030 |
High resolution limit [Å] | 1.000 | 4.470 | 1.000 |
Rmerge | 0.167 | 0.171 | 0.514 |
Rmeas | 0.197 | 0.194 | 0.650 |
Total number of observations | 8918 | ||
Number of reflections | 2977 | 30 | 215 |
<I/σ(I)> | 3.99 | 7.81 | 1.33 |
Completeness [%] | 93.9 | 88.2 | 94.7 |
Redundancy | 2.996 | 3.333 | 2.433 |
CC(1/2) | 0.988 | 0.975 | 0.742 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 298 | 0.5 M zinc acetate, 15% ethanol, 0.2 M MES, pH 6 |