7RU7
Crystal structure of BtrK, a decarboxylase involved in butirosin biosynthesis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-06 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.976260 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 71.912, 129.544, 45.721 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.720 - 1.400 |
R-factor | 0.178 |
Rwork | 0.177 |
R-free | 0.19580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2j66 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.1) |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.1-3865) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.130 | 48.130 | 1.420 |
High resolution limit [Å] | 1.400 | 7.670 | 1.400 |
Rmerge | 0.057 | 0.026 | 2.554 |
Rmeas | 0.059 | 0.027 | 2.660 |
Rpim | 0.016 | 0.008 | 0.733 |
Total number of observations | 1104496 | 7010 | 52384 |
Number of reflections | 84831 | 612 | 4097 |
<I/σ(I)> | 19.1 | 78.6 | 1 |
Completeness [%] | 99.9 | 99.6 | 98.8 |
Redundancy | 13 | 11.5 | 12.8 |
CC(1/2) | 1.000 | 0.999 | 0.552 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | 14% PEG400, 100 mM MES, 200 mM magnesium chloride |