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7RMY

De Novo designed tunable protein pockets, D_3-337

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.2.1
Synchrotron siteALS
Beamline8.2.1
Temperature [K]100
Detector technologyCCD
Collection date2019-03-19
DetectorADSC QUANTUM 315r
Wavelength(s)0.99996
Spacegroup nameP 41 21 2
Unit cell lengths90.723, 90.723, 108.709
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution40.570 - 3.170
R-factor0.2395
Rwork0.235
R-free0.28250
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)De novo Designed Model
RMSD bond angle12.803
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0003.280
High resolution limit [Å]3.1703.170
Number of reflections7677591
<I/σ(I)>12.52
Completeness [%]94.0
Redundancy14.9
CC(1/2)0.9050.939
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.5293PEG 4000, glycerol, magnesium chloride, calcium chloride, and bicine-Trizma base

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PDB entries from 2024-05-15

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