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7RF9

O2-, PLP-dependent desaturase Plu4 intermediate-bound enzyme

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL9-2
Synchrotron siteSSRL
BeamlineBL9-2
Temperature [K]100
Detector technologyPIXEL
Collection date2018-05-27
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.97946
Spacegroup nameP 1 21 1
Unit cell lengths74.922, 70.279, 138.568
Unit cell angles90.00, 98.11, 90.00
Refinement procedure
Resolution38.328 - 1.926
R-factor0.1532
Rwork0.151
R-free0.19430
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6c3d
Data reduction softwareXDS
Data scaling softwareAimless (0.7.1)
Phasing softwarePHASER
Refinement softwarePHENIX (1.14_3260)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]39.16039.1601.960
High resolution limit [Å]1.92610.5501.930
Rmerge0.1920.0962.211
Rmeas0.1990.0992.307
Rpim0.0540.0260.646
Total number of observations994358931
Number of reflections1066467064801
<I/σ(I)>11.1291.9
Completeness [%]98.898.390.7
Redundancy13.614.112.3
CC(1/2)0.9960.9960.852
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2930.1 M Bis-Tris:HCl; 27% PEG 3350; 0.2 M ammonium acetate; microseeded from crystals grown at pH 6.0; soaked with 2 mM PLP and 3 mM L-arginine for 8 min

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PDB entries from 2024-06-19

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