7RDL
Crystal structure of PCDN-22A, an anti-HIV antibody from the PCDN bnAb lineage
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-06-18 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 70.079, 105.471, 145.926 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.580 - 2.710 |
R-factor | 0.2314 |
Rwork | 0.230 |
R-free | 0.25820 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5bzd |
RMSD bond length | 0.002 |
RMSD bond angle | 0.578 |
Data reduction software | HKL-2000 (2.3.10) |
Data scaling software | SCALEPACK |
Phasing software | PHASER (2.7.17) |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.750 |
High resolution limit [Å] | 2.700 | 2.700 |
Rpim | 0.070 | 0.700 |
Number of reflections | 29990 | 1464 |
<I/σ(I)> | 9 | 1.5 |
Completeness [%] | 99.3 | 99.8 |
Redundancy | 5.9 | 6 |
CC(1/2) | 0.910 | 0.510 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.37 | 277.15 | 0.1 M Tris, 0.2 M magnesium chloride, 8% (w/v) PEG 8000 |