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7R8Z

Ancestral protein AncEn of Phosphomethylpyrimidine kinases family

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsLNLS BEAMLINE W01B-MX2
Synchrotron siteLNLS
BeamlineW01B-MX2
Temperature [K]100
Detector technologyPIXEL
Collection date2019-06-05
DetectorDECTRIS PILATUS 2M
Wavelength(s)1.45867
Spacegroup nameP 43 2 2
Unit cell lengths78.451, 78.451, 142.973
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution36.150 - 2.300
R-factor0.2046
Rwork0.204
R-free0.22360
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1jxh
RMSD bond length0.002
RMSD bond angle0.518
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwareMOLREP
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]36.1502.380
High resolution limit [Å]2.2982.298
Rmerge0.0891.648
Rmeas0.0911.683
Rpim0.0180.338
Number of reflections205801984
<I/σ(I)>26.961.91
Completeness [%]99.8
Redundancy25
CC(1/2)1.0000.826
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8292Protein condition: Protein 20 mg/mL, HEPES 50 mM pH 8.0, NaCl 150 mM and 2-mercaptoethanol 5 mM Reservoir condition: Potassium sodium tartrate 0.8 M, Tris 0.1 M pH 8.0, PEG-MME 5000 0.5% v/v

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PDB entries from 2024-07-17

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