7R2T
SYNJ2BP complex with a phosphorylated Vangl2 peptide at the P-1 position.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-06-14 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 60.100, 61.380, 145.310 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.888 - 2.500 |
R-factor | 0.2178 |
Rwork | 0.217 |
R-free | 0.23940 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2jik |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.888 | 46.888 | 2.570 |
High resolution limit [Å] | 2.500 | 11.180 | 2.500 |
Rmerge | 0.083 | 0.027 | 1.322 |
Rmeas | 0.086 | 0.029 | 1.380 |
Total number of observations | 247294 | ||
Number of reflections | 19104 | 261 | 1334 |
<I/σ(I)> | 20.45 | 55.78 | 1.76 |
Completeness [%] | 98.8 | 95.3 | 96.5 |
Redundancy | 12.945 | 9.977 | 12.142 |
CC(1/2) | 1.000 | 1.000 | 0.606 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.1 M Ammonium sulfate, 0.1 M Sodium formate, 0.1 M HEPES 7.0, 25 % v/v PEG Smear Broad |