7R1V
Crystal structure of E.coli BamA beta-barrel in complex with dynobactin A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-12-18 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.000003 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 65.790, 71.324, 116.555 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.360 - 2.500 |
R-factor | 0.248 |
Rwork | 0.246 |
R-free | 0.27480 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7nrf |
RMSD bond length | 0.008 |
RMSD bond angle | 0.930 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.3 (18-SEP-2020)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.360 | 2.600 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.217 | 4.571 |
Rpim | 0.044 | 0.893 |
Number of reflections | 19622 | 2171 |
<I/σ(I)> | 9 | 1 |
Completeness [%] | 99.0 | |
Redundancy | 27.9 | |
CC(1/2) | 0.998 | 0.718 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 298 | 0.12 M lithium sulfate, 0.02 M Tris pH7.5, 0.1 M sodium citrate pH 5.0, and 20% (v/v) PEG300 |