7QZ8
Transcriptional regulator LmrR with bound daunomycin and with Trp-67 and Trp-96 replaced by the unnatural amino acid 5,6-difluoroTrp
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-08-17 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.976250 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 104.146, 35.744, 71.154 |
Unit cell angles | 90.00, 97.69, 90.00 |
Refinement procedure
Resolution | 70.510 - 2.300 |
R-factor | 0.2443 |
Rwork | 0.241 |
R-free | 0.31720 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3f8b |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.7) |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 70.510 | 70.510 | 2.210 |
High resolution limit [Å] | 2.150 | 9.120 | 2.150 |
Rmerge | 0.052 | 0.044 | 1.132 |
Rmeas | 0.063 | 0.058 | 1.376 |
Rpim | 0.036 | 0.037 | 0.771 |
Total number of observations | 44105 | 543 | 3618 |
Number of reflections | 14279 | 202 | 1178 |
<I/σ(I)> | 8.7 | 23.6 | 0.7 |
Completeness [%] | 98.9 | 95.8 | 99 |
Redundancy | 3.1 | 2.7 | 3.1 |
CC(1/2) | 0.978 | 0.953 | 0.431 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.1 | 293 | Protein solution: 6 mg/ml in 20 mM Tris-HCl, pH 8.0, 300 mM NaCl. Reservoir solution: 100 mM SPG buffer, pH 6.1, 25% PEG 1500 |