7QTA
S1 nuclease from Aspergillus oryzae in complex with uridine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-10-18 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0332 |
Spacegroup name | P 1 |
Unit cell lengths | 43.040, 48.186, 65.232 |
Unit cell angles | 107.18, 90.11, 105.62 |
Refinement procedure
Resolution | 44.200 - 1.060 |
R-factor | 0.1205 |
Rwork | 0.118 |
R-free | 0.14680 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5fb9 |
RMSD bond length | 0.011 |
RMSD bond angle | 1.658 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.200 | 1.088 |
High resolution limit [Å] | 1.060 | 1.060 |
Rmeas | 0.085 | 1.145 |
Number of reflections | 187610 | 10422 |
<I/σ(I)> | 8 | 1.2 |
Completeness [%] | 86.0 | 64.47 |
Redundancy | 3.6 | 3.4 |
CC(1/2) | 0.997 | 0.373 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 291 | 0.2 M Sodium chloride, 0.05 M Calcium chloride, 0.1 M BIS-TRIS pH 5.5, 25% w/v Polyethylene glycol 3,350, protein concentration 10 mg/ml |