7QQJ
Sucrose phosphorylase from Jeotgalibaca ciconiae
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-1 |
Synchrotron site | ESRF |
Beamline | MASSIF-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-06-06 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.96546 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 51.639, 90.828, 96.170 |
Unit cell angles | 90.00, 92.83, 90.00 |
Refinement procedure
Resolution | 48.000 - 2.050 |
Rwork | 0.196 |
R-free | 0.25440 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7qqi |
RMSD bond length | 0.009 |
RMSD bond angle | 1.571 |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.000 | 48.000 | 2.110 |
High resolution limit [Å] | 2.050 | 8.940 | 2.050 |
Rmerge | 0.123 | 0.046 | 0.908 |
Rmeas | 0.172 | 0.064 | 1.269 |
Rpim | 0.121 | 0.046 | 0.885 |
Number of reflections | 54973 | 651 | 4272 |
<I/σ(I)> | 5.9 | ||
Completeness [%] | 98.8 | ||
Redundancy | 3 | 3 | 2.8 |
CC(1/2) | 0.987 | 0.994 | 0.336 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 291 | Protein was concentrated to 16 mg/ml in 25 mM Tris, pH 7.8, 100 mM NaCl. Drops were prepared by mixing protein and reservoir solution at a 1:1 volume ratio. Composition reservoir solution: 25% PEG 3350, 0.1 M Bis-tris propane, pH 6.5, 50 mM Na/K phosphate |