Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7QPX

Complex of rice blast (Magnaporthe oryzae) effector protein AVR-PikC with an engineered HMA domain of Pikp-1 (Pikp-SNK-EKE) from rice (Oryza sativa)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2018-02-09
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.9763
Spacegroup nameP 21 21 21
Unit cell lengths66.353, 83.130, 107.035
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution46.710 - 2.050
R-factor0.2056
Rwork0.204
R-free0.22660
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7a8w
RMSD bond length0.008
RMSD bond angle1.519
Data reduction softwareXDS
Data scaling softwareAimless (0.6.1)
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0267)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]46.71046.7102.110
High resolution limit [Å]2.0508.9402.050
Rmerge0.0810.0381.048
Rmeas0.0850.0411.103
Rpim0.0270.0140.340
Number of reflections377955342886
<I/σ(I)>15.2
Completeness [%]99.899.299.4
Redundancy9.9810.1
CC(1/2)0.9990.9980.838
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293NULL

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon