7QBL
Structure of cathepsin K in complex with the 3-cyano-3-aza-beta-amino acid inhibitor Gu2602
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-05-05 |
Detector | DECTRIS PILATUS 300K |
Wavelength(s) | 1.541870 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 70.737, 78.753, 31.070 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.900 - 2.000 |
R-factor | 0.2207 |
Rwork | 0.217 |
R-free | 0.28580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7nxm |
RMSD bond length | 0.009 |
RMSD bond angle | 1.594 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 28.900 | 28.900 | 2.120 |
High resolution limit [Å] | 2.000 | 5.910 | 2.000 |
Rmerge | 0.078 | 0.029 | 0.592 |
Rmeas | 0.089 | 0.032 | 0.674 |
Total number of observations | 48700 | ||
Number of reflections | 11829 | 491 | 1880 |
<I/σ(I)> | 12.39 | 39.6 | 2.53 |
Completeness [%] | 96.5 | 90.1 | 97.8 |
Redundancy | 4.117 | 4.493 | 4.036 |
CC(1/2) | 0.998 | 0.999 | 0.889 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 289 | 10% PEG 8000, 20% ethylene glycol, 0.02 M sodium formate, 0.02 M ammonium acetate, 0.02 M trisodium citrate, 0.02 M sodium potassium L-tartrate, 0.02 M sodium oxamate, 0.1 M MES/imidazole pH 6.5 |