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7QBL

Structure of cathepsin K in complex with the 3-cyano-3-aza-beta-amino acid inhibitor Gu2602

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyPIXEL
Collection date2020-05-05
DetectorDECTRIS PILATUS 300K
Wavelength(s)1.541870
Spacegroup nameP 21 21 2
Unit cell lengths70.737, 78.753, 31.070
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution28.900 - 2.000
R-factor0.2207
Rwork0.217
R-free0.28580
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7nxm
RMSD bond length0.009
RMSD bond angle1.594
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]28.90028.9002.120
High resolution limit [Å]2.0005.9102.000
Rmerge0.0780.0290.592
Rmeas0.0890.0320.674
Total number of observations48700
Number of reflections118294911880
<I/σ(I)>12.3939.62.53
Completeness [%]96.590.197.8
Redundancy4.1174.4934.036
CC(1/2)0.9980.9990.889
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP28910% PEG 8000, 20% ethylene glycol, 0.02 M sodium formate, 0.02 M ammonium acetate, 0.02 M trisodium citrate, 0.02 M sodium potassium L-tartrate, 0.02 M sodium oxamate, 0.1 M MES/imidazole pH 6.5

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PDB entries from 2024-07-10

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