7QBK
Crystal structure of a second homolog of R2-like ligand-binding oxidase in Sulfolobus acidocaldarius (SaR2loxII)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-11-01 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.984 |
Spacegroup name | P 64 |
Unit cell lengths | 128.029, 128.029, 41.894 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 41.910 - 2.260 |
R-factor | 0.2034 |
Rwork | 0.202 |
R-free | 0.23920 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4hr0 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.541 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.19_4092) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 41.910 | 2.341 |
High resolution limit [Å] | 2.260 | 2.260 |
Rmerge | 0.159 | 1.442 |
Rmeas | 0.186 | 1.683 |
Rpim | 0.095 | 0.850 |
Number of reflections | 17196 | 1739 |
<I/σ(I)> | 6.67 | 0.91 |
Completeness [%] | 91.8 | 93.53 |
Redundancy | 3.6 | 3.7 |
CC(1/2) | 0.991 | 0.398 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 9 | 294 | 24% (w/v) polyethylene glycol 1500, 5% (v/v) formamide, 40 mM sodium propionate, 20 mM sodium cacodylate trihydrate, 40 mM bis-tris propane |