7QA3
Crystal structure of PqsR (MvfR) ligand-binding domain in complex with compound N-((2-(4-phenoxyphenyl)thiazol-5-yl)methyl)-2-(trifluoromethyl)pyridin-4-amine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, DESY BEAMLINE P11 |
Synchrotron site | PETRA III, DESY |
Beamline | P11 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-09-12 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9780 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 113.018, 122.610, 112.784 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 53.860 - 2.670 |
R-factor | 0.2102 |
Rwork | 0.208 |
R-free | 0.24510 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2q7v |
RMSD bond length | 0.012 |
RMSD bond angle | 1.458 |
Data reduction software | autoPROC |
Data scaling software | STARANISO |
Phasing software | PHENIX (1.19.2_4158) |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 112.800 | 2.670 |
High resolution limit [Å] | 2.670 | 2.670 |
Rpim | 0.032 | 0.427 |
Number of reflections | 14428 | 710 |
<I/σ(I)> | 14.8 | 1.5 |
Completeness [%] | 94.0 | |
Redundancy | 13.3 | |
CC(1/2) | 0.999 | 0.732 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 1.7 M Sodium chloride 15 %(v/v) Glycerol 85 mM Sodium acetate pH 4.6 Protein: 7.5 mg/ml Compound: 1.5 mM |