Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7Q9L

Transthyretin complexed with (E)-4-(2-(naphthalen-1-yl)vinyl)benzene-1,2-diol

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsMAX IV BEAMLINE BioMAX
Synchrotron siteMAX IV
BeamlineBioMAX
Temperature [K]100
Detector technologyPIXEL
Collection date2018-10-18
DetectorDECTRIS EIGER2 X 16M
Wavelength(s)0.97993
Spacegroup nameP 21 2 21
Unit cell lengths43.048, 64.749, 85.046
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution42.560 - 1.450
R-factor0.1344
Rwork0.133
R-free0.16330
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)in-house model
RMSD bond length0.012
RMSD bond angle1.467
Data reduction softwareXDS
Data scaling softwareAimless (0.7.4)
Phasing softwarePHASER (2.8.3)
Refinement softwareREFMAC (5.8.0267)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]43.05043.0501.470
High resolution limit [Å]1.4507.9401.450
Rmerge0.0510.0531.376
Rmeas0.0540.0581.444
Rpim0.0170.0220.431
Number of reflections429623162115
<I/σ(I)>22.1
Completeness [%]100.09799.9
Redundancy10.57.510.7
CC(1/2)0.9990.9940.799
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.5298TTR:SB11 complex at 5.2mg/ml in 10mM sodium phosphate pH7.6 and 100mM potassium chloride was mixed 1:1 with 1.3-1.6M sodium citrate and 3.5% glycerol.

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon