7Q84
Crystal structure of human peroxisomal acyl-Co-A oxidase 1a, apo-form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2021-05-01 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 1.0332 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 87.871, 133.222, 139.564 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.230 - 2.000 |
R-factor | 0.1854 |
Rwork | 0.183 |
R-free | 0.22040 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1is2 |
RMSD bond length | 0.015 |
RMSD bond angle | 1.969 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.180 | 2.071 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.092 | 1.319 |
Rmeas | 0.096 | 1.367 |
Rpim | 0.026 | 0.358 |
Number of reflections | 110023 | 10875 |
<I/σ(I)> | 17.38 | |
Completeness [%] | 99.0 | 99.35 |
Redundancy | 13.9 | |
CC(1/2) | 0.999 | 0.860 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298.15 | 12.5 % PEG 8000, 0.09 M ammonium sulfate, 0.05 M sodium cacodylate (pH 6.0) |