7Q4S
Structure of the Pseudomonas aeruginosa bacteriophage JG004 endolysin Pae87, apo form.
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-12-18 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97926 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 59.247, 68.085, 93.100 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 55.018 - 2.500 |
Rwork | 0.222 |
R-free | 0.27790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5nm7 |
RMSD bond length | 0.002 |
RMSD bond angle | 1.121 |
Data reduction software | DIALS (2.2.10) |
Data scaling software | Aimless (0.7.7) |
Phasing software | MOLREP (11.7.02) |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 59.250 | 2.600 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.183 | 0.990 |
Rmeas | 0.202 | 1.087 |
Rpim | 0.083 | 0.444 |
Number of reflections | 13640 | 1509 |
<I/σ(I)> | 6 | 2.1 |
Completeness [%] | 99.7 | 99.1 |
Redundancy | 5.7 | 5.7 |
CC(1/2) | 0.991 | 0.860 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 9.5 | 294 | 20% (w/v) PEG 8000, 0.1 M CHES-NaOH, 20 mM Tris-HCl |