7Q4F
Structure of coproheme decarboxylase from Corynebacterium dipththeriae W183Y mutant in complex with coproheme
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-2 |
Synchrotron site | ESRF |
Beamline | ID23-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-08 |
Detector | DECTRIS PILATUS3 X 2M |
Wavelength(s) | 0.8731 |
Spacegroup name | P 3 1 2 |
Unit cell lengths | 141.809, 141.809, 124.863 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 43.510 - 2.150 |
R-factor | 0.1416 |
Rwork | 0.140 |
R-free | 0.18220 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6xuc |
RMSD bond length | 0.004 |
RMSD bond angle | 0.602 |
Data reduction software | XDS |
Phasing software | PHASER |
Refinement software | PDB-REDO |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.509 | 2.227 |
High resolution limit [Å] | 2.150 | 2.150 |
Rmerge | 0.378 | |
Rmeas | 0.388 | 4.259 |
Number of reflections | 77872 | 6892 |
<I/σ(I)> | 9.37 | 0.64 |
Completeness [%] | 97.0 | |
Redundancy | 19.9 | |
CC(1/2) | 0.994 | 0.223 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295.15 | 20 %w/v PEG 3350 (Polymer), 0.1 M CBTP 6.4 pH (Buffer) |